Scientific articles using ‘sneaked references’ to inflate their citation numbers

[…] A recent Journal of the Association for Information Science and Technology article by our team of academic sleuths – which includes information scientists, a computer scientist and a mathematician – has revealed an insidious method to artificially inflate citation counts through metadata manipulations: sneaked references.

Hidden manipulation

People are becoming more aware of scientific publications and how they work, including their potential flaws. Just last year more than 10,000 scientific articles were retracted. The issues around citation gaming and the harm it causes the scientific community, including damaging its credibility, are well documented.

[…]

we found through a chance encounter that some unscrupulous actors have added extra references, invisible in the text but present in the articles’ metadata, when they submitted the articles to scientific databases. The result? Citation counts for certain researchers or journals have skyrocketed, even though these references were not cited by the authors in their articles.

Chance discovery

The investigation began when Guillaume Cabanac, a professor at the University of Toulouse, wrote a post on PubPeer, a website dedicated to postpublication peer review, in which scientists discuss and analyze publications. In the post, he detailed how he had noticed an inconsistency: a Hindawi journal article that he suspected was fraudulent because it contained awkward phrases had far more citations than downloads, which is very unusual.

The post caught the attention of several sleuths who are now the authors of the JASIST article. We used a scientific search engine to look for articles citing the initial article. Google Scholar found none, but Crossref and Dimensions did find references. The difference? Google Scholar is likely to mostly rely on the article’s main text to extract the references appearing in the bibliography section, whereas Crossref and Dimensions use metadata provided by publishers.

[…]

In the journals published by Technoscience Academy, at least 9% of recorded references were “sneaked references.” These additional references were only in the metadata, distorting citation counts and giving certain authors an unfair advantage. Some legitimate references were also lost, meaning they were not present in the metadata.

In addition, when analyzing the sneaked references, we found that they highly benefited some researchers. For example, a single researcher who was associated with Technoscience Academy benefited from more than 3,000 additional illegitimate citations. Some journals from the same publisher benefited from a couple hundred additional sneaked citations.

[…]

Why is this discovery important? Citation counts heavily influence research funding, academic promotions and institutional rankings. Manipulating citations can lead to unjust decisions based on false data. More worryingly, this discovery raises questions about the integrity of scientific impact measurement systems, a concern that has been highlighted by researchers for years. These systems can be manipulated to foster unhealthy competition among researchers, tempting them to take shortcuts to publish faster or achieve more citations.

[…]

Source: When scientific citations go rogue: Uncovering ‘sneaked references’

We finally know why some people seem immune to catching covid-19

Deliberately exposing people to the coronavirus behind covid-19 in a so-called challenge study has helped us understand why some people seem to be immune to catching the infection.

As part of the first such covid-19 study, carried out in 2021, a group of international researchers looked at 16 people with no known health conditions who had neither tested positive for the SARS-CoV-2 virus nor been vaccinated against it.

The original variant of SARS-CoV-2 was sprayed up their noses. Nasal and blood samples were taken before this exposure and then six to seven times over the 28 days after. They also had SARS-CoV-2 tests twice a day.

[…]

In total, the researchers looked at more than 600,000 blood and nasal cells across all the individuals.

They found that in the second and third groups, the participants produced interferon – a substance that helps the immune system fight infections – in their blood before it was produced in their nasopharynx, the upper part of the nose behind the throat where the nasal samples were taken from. The interferon response, when it did occur in the nasopharynx, was actually higher in the noses of those in the second group than the third, says Teichmann.

These groups also didn’t have active infections within their T-cells and macrophages, which are both types of immune cell, says team member Marko Nikolic at University College London.

The results suggest that high levels of activity of an immune system gene called HLA-DQA2 before SARS-CoV-2 exposure helped prevent a sustained infection.

[…]

However, most people have now been exposed to “a veritable mosaic of SARS-CoV-2 variants”, rather than just the ancestral variant used in this study. The results may therefore not reflect cell responses outside of a trial setting, he says.

 

Journal reference:

Nature DOI: 10.1038/s41586-024-07575-x

 

Source: We finally know why some people seem immune to catching covid-19 | New Scientist

Seven types of microplastics found in the human penises, raises questions about sexual function

The proliferation of microplastics (MPs) represents a burgeoning environmental and health crisis. Measuring less than 5 mm in
diameter, MPs have inltrated atmospheric, freshwater, and terrestrial ecosystems, penetrating commonplace consumables like
seafood, sea salt, and bottled beverages. Their size and surface area render them susceptible to chemical interactions with
physiological uids and tissues, raising bioaccumulation and toxicity concerns. Human exposure to MPs occurs through ingestion,
inhalation, and dermal contact. To date, there is no direct evidence identifying MPs in penile tissue. The objective of this study was
to assess for potential aggregation of MPs in penile tissue. Tissue samples were extracted from six individuals who underwent
surgery for a multi-component inatable penile prosthesis (IPP).
[…]
Seven
types of MPs were found in the penile tissue, with polyethylene terephthalate (47.8%) and polypropylene (34.7%) being the most
prevalent. The detection of MPs in penile tissue raises inquiries on the ramications of environmental pollutants on sexual health.
Our research adds a key dimension to the discussion on man-made pollutants, focusing on MPs in the male reproductive system.
IJIR: Your Sexual Medicine Journal; https://doi.org/10.1038/s41443-024-00930-6

Source: Detection of microplastics in the human penis | International Journal of Impotence Research

Mathematicians find odd shapes that roll like a wheel in any dimension

Mathematicians have reinvented the wheel with the discovery of shapes that can roll smoothly when sandwiched between two surfaces, even in four, five or any higher number of spatial dimensions. The finding answers a question that researchers have been puzzling over for decades.

Such objects are known as shapes of constant width, and the most familiar in two and three dimensions are the circle and the sphere. These aren’t the only such shapes, however. One example is the Reuleaux triangle, which is a triangle with curved edges, while people in the UK are used to handling equilateral curve heptagons, otherwise known as the shape of the 20 and 50 pence coins. In this case, being of constant width allows them to roll inside coin-operated machines and be recognised regardless of their orientation.

[…]

While shapes with more than three dimensions are impossible to visualise, mathematicians can define them by extending 2D and 3D shapes in logical ways. For example, just as a circle or a sphere is the set of points that sits at a constant distance from a central point, the same is true in higher dimensions. “Sometimes the most fascinating phenomena are discovered when you look at higher and higher dimensions,” says Gil Kalai at the Hebrew University of Jerusalem in Israel.

Now, Andrii Arman at the University of Manitoba in Canada and his colleagues have answered Schramm’s question and found a set of constant-width shapes, in any dimension, that are indeed smaller than an equivalent dimensional sphere.

[…]

The first part of the proof involves considering a sphere with n dimensions and then dividing it into 2n equal parts – so four parts for a circle, eight for a 3D sphere, 16 for a 4D sphere and so on. The researchers then mathematically stretch and squeeze these segments to alter their shape without changing their width. “The recipe is very simple, but we understood that only after all of our elaboration,” says team member Andriy Bondarenko at the Norwegian University of Science and Technology.

The team proved that it is always possible to do this distortion in such a way that you end up with a shape that has a volume at most 0.9n times that of the equivalent dimensional sphere. This means that as you move to higher and higher dimensions, the shape of constant width gets proportionally smaller and smaller compared with the sphere.

Visualising this is difficult, but one trick is to imagine the lower-dimensional silhouette of a higher-dimensional object. When viewed at certain angles, the 3D shape appears as a 2D Reuleaux triangle (see the middle image above). In the same way, the 3D shape can be seen as a “shadow” of the 4D one, and so on.  “The shapes in higher dimensions will be in a certain sense similar, but will grow in complexity as [the] dimension grows,” says Arman.

Having identified these shapes, mathematicians now hope to study them further. “Even with the new result, which takes away some of the mystery about them, they are very mysterious sets in high dimensions,” says Kalai.

 

Source: Mathematicians find odd shapes that roll like a wheel in any dimension | New Scientist

What’s Actually In Tattoo Ink? No One Really Knows

Nearly a third of U.S. adults have tattoos, so plenty of you listeners can probably rattle off the basic guidelines of tattoo safety: Make sure you go to a reputable tattoo artist who uses new, sterile needles. Stay out of the ocean while you’re healing so you don’t pick up a smidgen of flesh-eating bacteria. Gently wash your new ink with soap and water, avoid sun exposure and frequently apply an unscented moisturizer—easy-peasy.

But body art enthusiasts might face potential risks from a source they don’t expect: tattoo inks themselves. Up until relatively recently tattoo inks in the U.S. were totally unregulated. In 2022 the federal government pulled tattoo inks under the regulatory umbrella of cosmetics, which means the Food and Drug Administration can oversee these products. But now researchers are finding that many commercial inks contain ingredients they’re not supposed to. Some of these additives are simply compounds that should be listed on the packaging and aren’t. But others could pose a risk to consumers.

For Science Quickly, I’m Rachel Feltman. I’m joined today by John Swierk, an assistant professor of chemistry at Binghamton University, State University of New York. His team is trying to figure out exactly what goes into each vial of tattoo ink—and how tattoos actually work in the first place—to help make body art safer, longer-lasting and maybe even cooler.

[…]

one of the areas we got really interested in was trying to understand why light causes tattoos to fade. This is a huge question when you think about something with laser tattoo removal, where you’re talking about an industry on the scale of $1 billion a year.

And it turns out we really don’t understand that process. And so starting to look at how the tattoo pigments change when you expose them to light, what that might be doing in the skin, then led us to a lot of other questions about tattoos that we realized weren’t well understood—even something as simple as what’s actually in tattoo ink.

[…]

recently we’ve been looking at commercial tattoo inks and sort of surprised to find that in the overwhelming majority of them, we’re seeing things that are not listed as part of the ingredients….Now that doesn’t necessarily mean the things that are in these inks are unsafe, but it does cause a huge problem if you want to try to understand something about the safety of tattoos.

[…]

I think most people would agree that it would be great to know that tattoo inks are safe [and] being made safely, you know? And of course, that’s not unique to tattoo inks; cosmetics and supplements have a lot of similar problems that we need to work on.

But, if we’re going to get a better grasp on the chemistry and even the immunology of tattoos, that’s not just going to help us make them safer but, you know, potentially improve healing, appearance, longevity.

I mean, I think about that start-up that promised “ephemeral tattoos” that now folks a few years later are coming out and saying, “These tattoos have not gone away,” and thinking about how much potential there is for genuine innovation if we can start to answer some of these questions.

[…]

we can start to think about designing new pigments that might have better colorfastness, less reactivity, less sort of bleeding of the lines, right, over time. But all of those things can only happen if we actually understand tattoos, and we really just don’t understand them that well at the moment.

[…]

We looked at 54 inks, and of the 54, 45 had what we consider to be major discrepancies—so these were either unlisted pigments, unlisted additives.

And that was really concerning to us, right? You’re talking about inks coming from major, global, industry-leading manufacturers all the way down to smaller, more niche inks—that there were problems across the board.

So we found things like incorrect pigments being listed. We found issues of some major allergens being used—these aren’t necessarily compounds that are specifically toxic, but to some people they can generate a really pronounced allergic response.

And a couple of things: we found an antibiotic that’s most commonly used for urinary tract infections.

We found a preservative that the FDA has cautioned nursing mothers against, you know, having exposure to—so things that at a minimum, need to be disclosed so that consumers could make informed choices.

[…]

if somebody’s thinking about getting a tattoo, they should be working with an artist who is experienced, who has apprenticed under experienced artists, who is really following best practices in terms of sanitation, aftercare, things like that. That’s where we know you can have a problem. Beyond that, I think it’s a matter of how comfortable you are with some degree of risk.

The point I always really want to emphasize is that, you know, our work isn’t saying anything about whether tattoos are safe or not.

It’s the first step in that process. Just because we found some stuff in the inks doesn’t mean that you shouldn’t get a tattoo or that you have a new risk for skin cancer or something like that…. it’s that this is the process of how science grows, right—that we have to start understanding the basics and the fundamentals so that we can build the next questions on top of that.

And our understanding of tattoos in the body is still at such an early level that we don’t really even understand what the risk factors would be, “What should we be looking for?”

So I think it’s like with anything in life: if you’re comfortable with a degree of risk, then, yeah, go ahead and get the tattoo. People get tattoos for lots of reasons that are important and meaningful and very impactful in a positive way in their life. And I think a concern over a hypothetical risk is probably not worth the potential positives of getting a tattoo.

We know that light exposure— particularly the sunlight—is not great for the tattoo, and if we have concerns about long-term pigment breakdown, ultraviolet light is probably going to enhance that, so keeping your tattoo covered, using sunscreen when you can’t keep it covered—that’s probably very important. If you’re really concerned about the risk, we can think about the size of the tattoo. So somebody with a relatively small piece of line art on their back is in a very different potential risk category than somebody who is fully sleeved and, you know, covered from, say, neck to ankle in tattoos.

And again we’re not saying that either those people have a significant risk that they need to be worried about, but if somebody is concerned, the person with the small line art on the back is much less likely to have to worry about the risk than somebody with a huge tattoo.

We also know that certain colors, like yellow in particular, fade much more readily. That suggests that those pigments are interacting with the body a lot more.

Staying away from bright colors and focusing on black inks might be a more prudent option there, but again, right, a lot of these are hypothetical and we don’t want to alarm people or scare them.

[…]

We’re also still working on understanding what tattoo pigments break down into.

We really don’t understand a lot about laser tattoo removal, and if there is some aspect of tattooing that gives me pause, it’s probably that part. It’s a very reasonable concern, I think, that you may have pigments that are entirely safe in the skin, but once you start zapping them with high-powered lasers, we don’t know what you do to the chemistry, and so that could change the dynamic a lot. And so we’re trying to figure out how to do that and, I think, making some progress there. And then the last area—which is, is new to us but kind of fun—is actually just looking at the biomechanics of tattooing. You would think that we’d really understand how the ink goes into the skin, how it stays in the skin, but the picture there is a little bit hazy

[…]

One of the interesting things, when you talk to ink manufacturers and artists, is that they sort of have this intuitive feel for … sort of what the viscosity of the ink should be like and how much pigment is in there but can’t necessarily articulate why a particular viscosity is good or why a particular pigment loading is good. And so we think if we understand something about the process by which the ink goes…and so we think understanding the biomechanics could really open some interesting possibilities and lead to better, more interesting tattoos down the road as well.

[…]

Source: What’s Actually In Tattoo Ink? No One Really Knows | Scientific American

“Deny, denounce, delay”: ultra-processed food companies fighting using big tobacco type tactics

When the Brazilian nutritional scientist Carlos Monteiro coined the term “ultra-processed foods” 15 years ago, he established what he calls a “new paradigm” for assessing the impact of diet on health.

Monteiro had noticed that although Brazilian households were spending less on sugar and oil, obesity rates were going up. The paradox could be explained by increased consumption of food that had undergone high levels of processing, such as the addition of preservatives and flavorings or the removal or addition of nutrients.

But health authorities and food companies resisted the link, Monteiro tells the FT. “[These are] people who spent their whole life thinking that the only link between diet and health is the nutrient content of foods … Food is more than nutrients.”

Monteiro’s food classification system, “Nova,” assessed not only the nutritional content of foods but also the processes they undergo before reaching our plates. The system laid the groundwork for two decades of scientific research linking the consumption of UPFs to obesity, cancer, and diabetes.

Studies of UPFs show that these processes create food—from snack bars to breakfast cereals to ready meals—that encourages overeating but may leave the eater undernourished. A recipe might, for example, contain a level of carbohydrate and fat that triggers the brain’s reward system, meaning you have to consume more to sustain the pleasure of eating it.

In 2019, American metabolic scientist Kevin Hall carried out a randomized study comparing people who ate an unprocessed diet with those who followed a UPF diet over two weeks. Hall found that the subjects who ate the ultra-processed diet consumed around 500 more calories per day, more fat and carbohydrates, less protein—and gained weight.

The rising concern about the health impact of UPFs has recast the debate around food and public health, giving rise to books, policy campaigns, and academic papers. It also presents the most concrete challenge yet to the business model of the food industry, for whom UPFs are extremely profitable.

The industry has responded with a ferocious campaign against regulation. In part it has used the same lobbying playbook as its fight against labeling and taxation of “junk food” high in calories: big spending to influence policymakers.

FT analysis of US lobbying data from non-profit Open Secrets found that food and soft drinks-related companies spent $106 million on lobbying in 2023, almost twice as much as the tobacco and alcohol industries combined. Last year’s spend was 21 percent higher than in 2020, with the increase driven largely by lobbying relating to food processing as well as sugar.

In an echo of tactics employed by cigarette companies, the food industry has also attempted to stave off regulation by casting doubt on the research of scientists like Monteiro.

“The strategy I see the food industry using is deny, denounce, and delay,” says Barry Smith, director of the Institute of Philosophy at the University of London and a consultant for companies on the multisensory experience of food and drink.

So far the strategy has proved successful. Just a handful of countries, including Belgium, Israel, and Brazil, currently refer to UPFs in their dietary guidelines. But as the weight of evidence about UPFs grows, public health experts say the only question now is how, if at all, it is translated into regulation.

“There’s scientific agreement on the science,” says Jean Adams, professor of dietary public health at the MRC Epidemiology Unit at the University of Cambridge. “It’s how to interpret that to make a policy that people aren’t sure of.”

[…]

Source: “Deny, denounce, delay”: The battle over the risk of ultra-processed foods | Ars Technica

Lawyers To Plastic Makers: Prepare For ‘Astronomical’ PFAS Lawsuits

An anonymous reader quotes a report from the New York Times: The defense lawyer minced no words as he addressed a room full of plastic-industry executives. Prepare for a wave of lawsuits with potentially “astronomical” costs. Speaking at a conference earlier this year, the lawyer, Brian Gross, said the coming litigation could “dwarf anything related to asbestos,” one of the most sprawling corporate-liability battles in United States history. Mr. Gross was referring to PFAS, the “forever chemicals” that have emerged as one of the major pollution issues of our time. Used for decades in countless everyday objects — cosmetics, takeout containers, frying pans — PFAS have been linked to serious health risks including cancer. Last month the federal government said several types of PFAS must be removed from the drinking water of hundreds of millions of Americans. “Do what you can, while you can, before you get sued,” Mr. Gross said at the February session, according to a recording of the event made by a participant and examined by The New York Times. “Review any marketing materials or other communications that you’ve had with your customers, with your suppliers, see whether there’s anything in those documents that’s problematic to your defense,” he said. “Weed out people and find the right witness to represent your company.”

A wide swath of the chemicals, plastics and related industries are gearing up to fight a surge in litigation related to PFAS, or per- and polyfluoroalkyl substances, a class of nearly 15,000 versatile synthetic chemicals linked to serious health problems. […] PFAS-related lawsuits have already targeted manufacturers in the United States, including DuPont, its spinoff Chemours, and 3M. Last year, 3M agreed to pay at least $10 billion to water utilities across the United States that had sought compensation for cleanup costs. Thirty state attorneys general have also sued PFAS manufacturers, accusing the manufacturers of widespread contamination. But experts say the legal battle is just beginning. Under increasing scrutiny are a wider universe of companies that use PFAS in their products. This month, plaintiffs filed a class-action lawsuit against Bic, accusing the razor company for failing to disclose that some of its razors contained PFAS. Bic said it doesn’t comment on pending litigation, and said it had a longstanding commitment to safety.

The Biden administration has moved to regulate the chemicals, for the first time requiring municipal water systems to remove six types of PFAS. Last month, the Environmental Protection Agency also designated two of those PFAS chemicals as hazardous substances under the Superfund law, shifting responsibility for their cleanup at contaminated sites from taxpayers to polluters. Both rules are expected to prompt a new round of litigation from water utilities, local communities and others suing for cleanup costs. “To say that the floodgates are opening is an understatement,” said Emily M. Lamond, an attorney who focuses on environmental litigation at the law firm Cole Schotz. “Take tobacco, asbestos, MTBE, combine them, and I think we’re still going to see more PFAS-related litigation,” she said, referring to methyl tert-butyl ether, a former harmful gasoline additive that contaminated drinking water. Together, the trio led to claims totaling hundreds of billions of dollars.
Unlike tobacco, used by only a subset of the public, “pretty much every one of us in the United States is walking around with PFAS in our bodies,” said Erik Olson, senior strategic director for environmental health at the Natural Resources Defense Council. “And we’re being exposed without our knowledge or consent, often by industries that knew how dangerous the chemicals were, and failed to disclose that,” he said. “That’s a formula for really significant liability.”

Bilingual Brain-Reading Implant Decodes Spanish and English

For the first time, a brain implant has helped a bilingual person who is unable to articulate words to communicate in both of his languages. An artificial-intelligence (AI) system coupled to the brain implant decodes, in real time, what the individual is trying to say in either Spanish or English.

The findings, published on 20 May in Nature Biomedical Engineering, provide insights into how our brains process language, and could one day lead to long-lasting devices capable of restoring multilingual speech to people who can’t communicate verbally.

[…]

The person at the heart of the study, who goes by the nickname Pancho, had a stroke at age 20 that paralysed much of his body. As a result, he can moan and grunt but cannot speak clearly.

[…]

the team developed an AI system to decipher Pancho’s bilingual speech. This effort, led by Chang’s PhD student Alexander Silva, involved training the system as Pancho tried to say nearly 200 words. His efforts to form each word created a distinct neural pattern that was recorded by the electrodes.

The authors then applied their AI system, which has a Spanish module and an English one, to phrases as Pancho tried to say them aloud. For the first word in a phrase, the Spanish module chooses the Spanish word that matches the neural pattern best. The English component does the same, but chooses from the English vocabulary instead. For example, the English module might choose ‘she’ as the most likely first word in a phrase and assess its probability of being correct to be 70%, whereas the Spanish one might choose ‘estar’ (to be) and measure its probability of being correct at 40%.

[…]

From there, both modules attempt to build a phrase. They each choose the second word based on not only the neural-pattern match but also whether it is likely to follow the first one. So ‘I am’ would get a higher probability score than ‘I not’. The final output produces two sentences — one in English and one in Spanish — but the display screen that Pancho faces shows only the version with the highest total probability score.

The modules were able to distinguish between English and Spanish on the basis of the first word with 88% accuracy and they decoded the correct sentence with an accuracy of 75%.

[…]

The findings revealed unexpected aspects of language processing in the brain. Some previous experiments using non-invasive tools have suggested that different languages activate distinct parts of the brain. But the authors’ examination of the signals recorded directly in the cortex found that “a lot of the activity for both Spanish and English was actually from the same area”, Silva says.

Furthermore, Pancho’s neurological responses didn’t seem to differ much from those of children who grew up bilingual, even though he was in his thirties when he learnt English — in contrast to the results of previous studies. Together, these findings suggest to Silva that different languages share at least some neurological features, and that they might be generalizable to other people.

[…]

Source: Bilingual Brain-Reading Implant Decodes Spanish and English | Scientific American

Device Decodes ‘Internal Speech’ in the Brain

Scientists have developed brain implants that can decode internal speech — identifying words that two people spoke in their minds without moving their lips or making a sound.

Although the technology is at an early stage — it was shown to work with only a handful of words, and not phrases or sentences — it could have clinical applications in future.

Similar brain–computer interface (BCI) devices, which translate signals in the brain into text, have reached speeds of 62–78 words per minute for some people. But these technologies were trained to interpret speech that is at least partly vocalized or mimed.

The latest study — published in Nature Human Behaviour on 13 May — is the first to decode words spoken entirely internally, by recording signals from individual neurons in the brain in real time.

[…]

The researchers implanted arrays of tiny electrodes in the brains of two people with spinal-cord injuries. They placed the devices in the supramarginal gyrus (SMG), a region of the brain that had not been previously explored in speech-decoding BCIs.

Figuring out the best places in the brain to implant BCIs is one of the key challenges for decoding internal speech

[…]

wo weeks after the participants were implanted with microelectrode arrays in their left SMG, the researchers began collecting data. They trained the BCI on six words (battlefield, cowboy, python, spoon, swimming and telephone) and two meaningless pseudowords (nifzig and bindip). “The point here was to see if meaning was necessary for representation,” says Wandelt.

Over three days, the team asked each participant to imagine speaking the words shown on a screen and repeated this process several times for each word. The BCI then combined measurements of the participants’ brain activity with a computer model to predict their internal speech in real time.

For the first participant, the BCI captured distinct neural signals for all of the words and was able to identify them with 79% accuracy. But the decoding accuracy was only 23% for the second participant, who showed preferential representation for ‘spoon’ and ‘swimming’ and had fewer neurons that were uniquely active for each word. “It’s possible that different sub-areas in the supramarginal gyrus are more, or less, involved in the process,” says Wandelt.

Christian Herff, a computational neuroscientist at Maastricht University in the Netherlands, thinks these results might highlight the different ways in which people process internal speech. “Previous studies showed that there are different abilities in performing the imagined task and also different BCI control abilities,” adds Marchesotti.

The authors also found that 82–85% of neurons that were active during internal speech were also active when the participants vocalized the words. But some neurons were active only during internal speech, or responded differently to specific words in the different tasks.

[…]

Source: Device Decodes ‘Internal Speech’ in the Brain | Scientific American

Gene therapy relieves back pain, repairs damaged disc in mice

Disc-related back pain may one day meet its therapeutic match: gene therapy delivered by naturally derived nanocarriers that, a new study shows, repairs damaged discs in the spine and lowers pain symptoms in mice.

Scientists engineered nanocarriers using mouse connective-tissue cells called fibroblasts as a model of skin cells and loaded them with genetic material for a protein key to tissue development. The team injected a solution containing the carriers into damaged discs in mice at the same time the back injury occurred.

Assessing outcomes over 12 weeks, researchers found through imaging, tissue analysis, and mechanical and behavioral tests that the gene therapy restored structural integrity and function to degenerated discs and reduced signs of back pain in the animals.

[…]

“This can be used at the same time as surgery to actually boost healing of the disc itself,” said co-senior author Natalia Higuita-Castro, associate professor of biomedical engineering and neurological surgery at Ohio State. “Your own cells are actually doing the work and going back to a healthy state.”

The study was published online recently in the journal Biomaterials.

An estimated 40% of low-back pain cases are attributed to degeneration of the cushiony intervertebral discs that absorb shocks and provide flexibility to the spine, previous research suggests. And while trimming away bulging tissue from a herniated disc during surgery typically reduces pain, it does not repair the disc itself — which continues to degenerate with the passage of time.

[…]

This new study builds upon previous work in Higuita-Castro’s lab, which reported a year ago that nanocarriers called extracellular vesicles loaded with anti-inflammatory cargo curbed tissue injury in damaged mouse lungs. The engineered carriers are replicas of the natural extracellular vesicles that circulate in humans’ bloodstream and biological fluids, carrying messages between cells.

To create the vesicles, scientists apply an electrical charge to a donor cell to transiently open holes in its membrane, and deliver externally obtained DNA inside that converts to a specific protein, as well as molecules that prompt the manufacture of even more of a functional protein.

In this study, the cargo consisted of material to produce a “pioneer” transcription factor protein called FOXF1, which is important in the development and growth of tissues.

[…]

Compared to controls, the discs in mice receiving gene therapy showed a host of improvements: The tissue plumped back up and became more stable through production of a protein that holds water and other matrix proteins, all helping promote range of motion, load bearing and flexibility in the spine. Behavioral tests showed the therapy decreased symptoms of pain in mice, though these responses differed by sex — males and females showed varying levels of susceptibility to pain based on the types of movement being assessed.

The findings speak to the value of using universal adult donor cells to create these extracellular vesicle therapies, the researchers said, because they don’t carry the risk of generating an immune response. The gene therapy also, ideally, would function as a one-time treatment — a therapeutic gift that keeps on giving.

[…]

There are more experiments to come, testing the effects of other transcription factors that contribute to intervertebral disc development. And because this first study used young adult mice, the team also plans to test the therapy’s effects in older animals that model age-related degeneration and, eventually, in clinical trials for larger animals known to develop back problems.

[…]

Story Source:

Materials provided by Ohio State University. Original written by Emily Caldwell. Note: Content may be edited for style and length.


Journal Reference:

  1. Shirley N. Tang, Ana I. Salazar-Puerta, Mary K. Heimann, Kyle Kuchynsky, María A. Rincon-Benavides, Mia Kordowski, Gilian Gunsch, Lucy Bodine, Khady Diop, Connor Gantt, Safdar Khan, Anna Bratasz, Olga Kokiko-Cochran, Julie Fitzgerald, Damien M. Laudier, Judith A. Hoyland, Benjamin A. Walter, Natalia Higuita-Castro, Devina Purmessur. Engineered extracellular vesicle-based gene therapy for the treatment of discogenic back pain. Biomaterials, 2024; 308: 122562 DOI: 10.1016/j.biomaterials.2024.122562

Source: Gene therapy relieves back pain, repairs damaged disc in mice | ScienceDaily

Flood of Fake Science Forces Multiple Journal Closures

Fake studies have flooded the publishers of top scientific journals, leading to thousands of retractions and millions of dollars in lost revenue. The biggest hit has come to Wiley, a 217-year-old publisher based in Hoboken, N.J., which Tuesday will announce that it is closing 19 journals, some of which were infected by large-scale research fraud.
In the past two years, Wiley has retracted more than 11,300 papers that appeared compromised, according to a spokesperson, and closed four journals. It isn’t alone: At least two other publishers have retracted hundreds of suspect papers each. Several others have pulled smaller clusters of bad papers.
Although this large-scale fraud represents a small percentage of submissions to journals, it threatens the legitimacy of the nearly $30 billion academic publishing industry and the credibility of science as a whole.
The discovery of nearly 900 fraudulent papers in 2022 at IOP Publishing, a physical sciences publisher, was a turning point for the nonprofit. “That really crystallized for us, everybody internally, everybody involved with the business,” said Kim Eggleton, head of peer review and research integrity at the publisher. “This is a real threat.”

Wiley will announce that it is closing 19 journals. Photo: Wiley

The sources of the fake science are “paper mills”—businesses or individuals that, for a price, will list a scientist as an author of a wholly or partially fabricated paper. The mill then submits the work, generally avoiding the most prestigious journals in favor of publications such as one-off special editions that might not undergo as thorough a review and where they have a better chance of getting bogus work published.
World-over, scientists are under pressure to publish in peer-reviewed journals—sometimes to win grants, other times as conditions for promotions. Researchers say this motivates people to cheat the system. Many journals charge a fee to authors to publish in them.
Problematic papers typically appear in batches of up to hundreds or even thousands within a publisher or journal. A signature move is to submit the same paper to multiple journals at once to maximize the chance of getting in, according to an industry trade group now monitoring the problem. Publishers say some fraudsters have even posed as academics to secure spots as guest editors for special issues and organizers of conferences, and then control the papers that are published there.
“The paper mill will find the weakest link and then exploit it mercilessly until someone notices,” said Nick Wise, an engineer who has documented paper-mill advertisements on social media and posts examples regularly on X under the handle @author_for_sale.
The journal Science flagged the practice of buying authorship in 2013. The website Retraction Watch and independent researchers have since tracked paper mills through their advertisements and websites. Researchers say they have found them in multiple countries including Russia, Iran, Latvia, China and India. The mills solicit clients on social channels such as Telegram or Facebook, where they advertise the titles of studies they intend to submit, their fee and sometimes the journal they aim to infiltrate. Wise said he has seen costs ranging from as little as $50 to as much as $8,500.
When publishers become alert to the work, mills change their tactics.
[…]
For Wiley, which publishes more than 2,000 journals, the problem came to light two years ago, shortly after it paid nearly $300 million for Hindawi, a company founded in Egypt in 1997 that included about 250 journals. In 2022, a little more than a year after the purchase, scientists online noticed peculiarities in dozens of studies from journals in the Hindawi family.
Scientific papers typically include citations that acknowledge work that informed the research, but the suspect papers included lists of irrelevant references. Multiple papers included technical-sounding passages inserted midway through, what Bishop called an “AI gobbledygook sandwich.” Nearly identical contact emails in one cluster of studies were all registered to a university in China where few if any of the authors were based. It appeared that all came from the same source.
[…]
The extent of the paper mill problem has been exposed by members of the scientific community who on their own have collected patterns in faked papers to recognize this fraud at scale and developed tools to help surface the work.
One of those tools, the “Problematic Paper Screener,” run by Guillaume Cabanac, a computer-science researcher who studies scholarly publishing at the Université Toulouse III-Paul Sabatier in France, scans the breadth of the published literature, some 130 million papers, looking for a range of red flags including “tortured phrases.”
Cabanac and his colleagues realized that researchers who wanted to avoid plagiarism detectors had swapped out key scientific terms for synonyms from automatic text generators, leading to comically misfit phrases. “Breast cancer” became “bosom peril”; “fluid dynamics” became “gooey stream”; “artificial intelligence” became “counterfeit consciousness.” The tool is publicly available.
Another data scientist, Adam Day, built “The Papermill Alarm,” a tool that uses large language models to spot signs of trouble in an article’s metadata, such as multiple suspect papers citing each other or using similar templates and simply altering minor experimental details. Publishers can pay to use the tool.
[…]
The incursion of paper mills has also forced competing publishers to collaborate. A tool launched through STM, the trade group of publishers, now checks whether new submissions were submitted to multiple journals at once, according to Joris van Rossum, product director who leads the “STM Integrity Hub,” launched in part to beat back paper mills. Last fall, STM added Day’s “The Papermill Alarm” to its suite of tools.
While publishers are fighting back with technology, paper mills are using the same kind of tools to stay ahead.
“Generative AI has just handed them a winning lottery ticket,” Eggleton of IOP Publishing said. “They can do it really cheap, at scale, and the detection methods are not where we need them to be. I can only see that challenge increasing.”

Source: Flood of Fake Science Forces Multiple Journal Closures – WSJ

Long covid linked to signs of ongoing inflammatory responses in blood

People who develop long covid after being hospitalised with severe covid-19 have raised levels of many inflammatory immune molecules compared with those who recovered fully after such a hospitalisation, according to a study of nearly 700 people.

The findings show that long covid has a real biological basis, says team member Peter Openshaw at Imperial College London. “People are not imagining it,” he says. “It’s genuinely happening to them.”

[…]

The study by Liew and her colleagues involved measuring the levels of 368 immune molecules in the blood of 659 people who were hospitalised with covid-19, mostly early on in the pandemic. The 426 people who were still reporting symptoms more than three months later were compared with the 233 who reported being fully recovered.

The study found that the patterns of immune activation reflected the main kinds of symptoms people with long covid reported. The five main symptom types were fatigue; cognitive impairment; anxiety and depression; cardiorespiratory symptoms; and gastrointestinal symptoms.

For instance, people with gastrointestinal symptoms had higher blood levels of SCG3, a signalling protein that is also elevated in the faeces of people with irritable bowel syndrome.

The findings won’t help with diagnosing whether people have long covid or not, says team member Chris Brightling at the University of Leicester in the UK. But once the condition has been diagnosed, testing for these molecules could help reveal what kind of long covid people have, and thus what kind of interventions might help, he says.

A study last year estimated that 36 million people in Europe had or have long covid. “Many people are still suffering,” says Brightling.

[…]

Journal reference:

Nature Immunology DOI: 10.1038/s41590-024-01778-0

Source: Long covid linked to signs of ongoing inflammatory responses in blood | New Scientist

Rapid biodegradation of microplastics generated from bio-based thermoplastic polyurethane in compost

Accumulation of microplastics in the natural environment is ultimately due to the chemical nature of widely used petroleum-based plastic polymers, which typically are inaccessible to biological processing. One way to mitigate this crisis is adoption of plastics that biodegrade if released into natural environments. In this work, we generated microplastic particles from a bio-based, biodegradable thermoplastic polyurethane (TPU-FC1) and demonstrated their rapid biodegradation via direct visualization and respirometry. Furthermore, we isolated multiple bacterial strains capable of using TPU-FC1 as a sole carbon source and characterized their depolymerization products. To visualize biodegradation of TPU materials as real-world products, we generated TPU-coated cotton fabric and an injection molded phone case and documented biodegradation by direct visualization and scanning electron microscopy (SEM), both of which indicated clear structural degradation of these materials and significant biofilm formation.

Source: Rapid biodegradation of microplastics generated from bio-based thermoplastic polyurethane | Scientific Reports

Conclusion

In this work, particle count and respirometry experiments demonstrated that microplastic particles from a bio-based thermoplastic polyurethane can rapidly biodegrade and therefore are transiently present in the environment. In contrast, microplastic particles from a widely used commercial thermoplastic, ethyl vinyl acetate, persists in the environment and showed no significant signs of biodegradation over the course of this experiment. Bacteria capable of utilizing TPU-FC1 as a carbon source were isolated and depolymerization of the material was confirmed by the early accumulation of monomers derived from the original polymer, which are metabolized by microbes in short order. Finally, we demonstrated that prototype products made from these materials biodegrade under home compost conditions. The generation of microplastics is an unavoidable consequence of plastic usage and mitigating the persistence of these particles by adoption of biodegradable material alternatives is a viable option for a future green circular economy.

The flow of air over Airfoils, or how planes fly

In this article we’ll investigate what makes airplanes fly by looking at the forces generated by the flow of air around the aircraft’s wings. More specifically, we’ll focus on the cross section of those wings to reveal the shape of an airfoil – you can see it presented in yellow below:

a wing with air flow and pressure showing as well as a selected angle of attack

We’ll find out how the shape and the orientation of the airfoil helps airplanes remain airborne. We’ll also learn about the behavior and properties of air and other flowing matter.

Source: Airfoil – Bartosz Ciechanowski

The article goes very deeply into how air flow works and is modelled, how velocity and pressure affect vectors, the shape of an airfoil, the boundry layer and the angle of attack. It requires a bit of scrolling before you get to the planes, but it’s mesmerising to play with the sliders.

Dog DNA testing company identifies human as dog

On Wednesday, WBZ News reported its investigations team receiving dog breed results from the company DNA My Dog after one of its reporters sent in a swab sample – from her own cheek.

According to the results from the Toronto-based company, WBZ News reporter Christina Hager is 40% Alaskan malamute, 35% shar-pei and 25% labrador.

Hager also sent her samples to two other pet genetic testing companies. The Melbourne, Australia- and Florida-based company Orivet reported that the sample “failed to provide the data necessary to perform the breed ID analysis”. Meanwhile, Washington-based company Wisdom Panel said that the sample “didn’t provide … enough DNA to produce a reliable result”.

WBZ News’ latest report comes after its investigations team sent in a sample from New Hampshire pet owner Michelle Leininger’s own cheek to DNA My Dog last year. In turn, the results declared Leininger 40% border collie, 32% cane corso and 28% bulldog.

[…]

Speaking to WBZ News last year following Leininger’s results, Lisa Moses, a Harvard Medical School veterinarian and bioethicist said: “I think that is a red flag for sure … A company should know if they’ve in any basic way analyzed a dog’s DNA, that that is not a dog.”

[…]

Source: Pet DNA testing company in doghouse after identifying human as canine | Dogs | The Guardian

COVID-19 Leaves Its Mark on the Brain. Significant Drops in IQ Scores Are Noted.

From the very early days of the pandemic, brain fog emerged as a significant health condition that many experience after COVID-19.

Brain fog is a colloquial term that describes a state of mental sluggishness or lack of clarity and haziness that makes it difficult to concentrate, remember things and think clearly.

Fast-forward four years and there is now abundant evidence that being infected with SARS-CoV-2 – the virus that causes COVID-19 – can affect brain health in many ways.

In addition to brain fog, COVID-19 can lead to an array of problems, including headaches, seizure disorders, strokes, sleep problems, and tingling and paralysis of the nerves, as well as several mental health disorders.

A large and growing body of evidence amassed throughout the pandemic details the many ways that COVID-19 leaves an indelible mark on the brain. But the specific pathways by which the virus does so are still being elucidated, and curative treatments are nonexistent.

Now, two new studies published in the New England Journal of Medicine shed further light on the profound toll of COVID-19 on cognitive health.

[…]

Most recently, a new study published in the New England Journal of Medicine assessed cognitive abilities such as memory, planning and spatial reasoning in nearly 113,000 people who had previously had COVID-19. The researchers found that those who had been infected had significant deficits in memory and executive task performance.

[…]

In the same study, those who had mild and resolved COVID-19 showed cognitive decline equivalent to a three-point loss of IQ. In comparison, those with unresolved persistent symptoms, such as people with persistent shortness of breath or fatigue, had a six-point loss in IQ. Those who had been admitted to the intensive care unit for COVID-19 had a nine-point loss in IQ. Reinfection with the virus contributed an additional two-point loss in IQ, as compared with no reinfection.

[…]

Another study in the same issue of the New England Journal of Medicine involved more than 100,000 Norwegians between March 2020 and April 2023. It documented worse memory function at several time points up to 36 months following a positive SARS-CoV-2 test.

Taken together, these studies show that COVID-19 poses a serious risk to brain health, even in mild cases, and the effects are now being revealed at the population level.

A recent analysis of the U.S. Current Population Survey showed that after the start of the COVID-19 pandemic, an additional one million working-age Americans reported having “serious difficulty” remembering, concentrating or making decisions than at any time in the preceding 15 years. Most disconcertingly, this was mostly driven by younger adults between the ages of 18 to 44.

Data from the European Union shows a similar trend – in 2022, 15 percent of people in the EU reported memory and concentration issues.

[…]

Source: COVID-19 Leaves Its Mark on the Brain. Significant Drops in IQ Scores Are Noted. | Scientific American

Universal Antivenom for Snake Bites Might Soon Be a Reality

[…]

a team of scientists says they’ve created a lab-made antibody geared to counteract toxic bites from a wide variety of snakes. In early tests with mice, the uber-antivenom appeared to work as intended.

Snake antivenom is typically derived from the antibodies of horses or other animals that produce a strong immune response to snake toxins. These donated antibodies can be highly effective at preventing serious injury and death from a snakebite, but they come with serious limitations.

The chemical makeup of one species’s toxin can vary significantly from another’s, for instance, so antibodies to one specific toxin provide little protection against others. Manufacturers can try to work around this by inoculating animals with several toxins at once, but this method has drawbacks, such as needing a higher dose of antivenom since only some of the antibodies will have any effect.

[…]

Though snake toxins are remarkably complex and different from one another, even within the same class, the team managed to find sections of these toxins that were pretty similar across different species.

The scientists produced a variety of 3FTx toxins in the lab and then screened them against a database of more than 50 billion synthetic antibodies, looking for ones that could potentially neutralize several toxins at once. After a few rounds of selection, they ultimately identified one antibody that seemed to broadly neutralize at least five different 3FTx variants, called 95Mat5. They then put the antibody to a real-life test, finding that it fully protected mice from dying from the toxins of the many-banded krait, Indian spitting cobra, and black mamba, in some cases better than conventional antivenom; it also offered some protection against venom from the king cobra.

[…]

As seen with the king cobra, the 95Mat5 antibody alone may not work against every elapid snake. And it wouldn’t protect against bites from viper snakes, the other major family of venomous snakes. But the team’s process of identifying broadly neutralizing antibodies—adapted from similar research on the HIV virus—could be used to find other promising antivenom candidates.

[…]

Source: Universal Antivenom for Snake Bites Might Soon Be a Reality

New evidence changes key ideas about Earth’s climate history – it wasn’t that hot

A new study published in Science resolves a long-standing scientific debate, and it stands to completely change the way we think about Earth’s climate evolution.

The research debunks the idea that Earth’s surface (across land and sea) has experienced really hot temperatures over the last two billion years. Instead, it shows that Earth has had a relatively stable and mild climate.

Temperature is an important control over chemical reactions that govern life and our environment. This ground-breaking work will have significant implications for scientists working on or questions surrounding biological and climate .

[…]

In the work, Dr. Isson and Ph.D. student Sofia Rauzi adopted novel methods to illuminate a history of Earth’s surface .

They utilized five unique data records derived from different rock types including shale, iron oxide, carbonate, silica, and phosphate. Collectively, these ‘geochemical’ records comprise over 30,000 that span Earth’s multi-billion-year history.

To date, the study is the most comprehensive collation and interpretation of one of the oldest geochemical records—. Oxygen isotopes are different forms of the element oxygen. It is also the first study to use all five existing records to chart a consistent ‘map’ of temperature across an enormous portion of geological time.

“By pairing oxygen isotope records from different minerals, we have been able to reconcile a unified history of temperature on Earth that is consistent across all five records, and the oxygen isotopic composition of seawater,” says Dr. Isson.

The study disproves ideas that early oceans were hot with temperatures greater than 60°C prior to approximately half a billion years ago, before the rise of animals and land plants. The data indicates relatively stable and temperate early-ocean and temperatures of around 10°C which upends current thinking about the environment that complex life evolved in.

The work produces the first ever record of the evolution of terrestrial (land-based) and marine clay abundance throughout Earth history. This is the first direct evidence for an intimate link between the evolution of plants, marine creatures that make skeletons and shells out of silica (siliceous life forms), clay formation, and .

“The results suggest that the process of clay formation may have played a key role in regulating climate on early Earth and sustaining the temperate conditions that allowed for the evolution and proliferation of life on Earth,” says Dr. Isson.

[…]

The work produces the first ever record of the evolution of terrestrial (land-based) and marine clay abundance throughout Earth history. This is the first direct evidence for an intimate link between the evolution of plants, marine creatures that make skeletons and shells out of silica (siliceous life forms), clay formation, and .

“The results suggest that the process of clay formation may have played a key role in regulating climate on early Earth and sustaining the temperate conditions that allowed for the evolution and proliferation of life on Earth,” says Dr. Isson.

Source: New evidence changes key ideas about Earth’s climate history

Key advance for capturing carbon from the air

vanadium crystal bar and cube

Zeiss Makro-Planar T*2/100mm ZE

A chemical element so visually striking that it was named for a goddess shows a “Goldilocks” level of reactivity — neither too much nor too little — that makes it a strong candidate as a carbon scrubbing tool.

The element is vanadium, and research by Oregon State University scientists has demonstrated the ability of vanadium peroxide molecules to react with and bind carbon dioxide — an important step toward improved technologies for removing carbon dioxide from the atmosphere.

[…]

how some transition metal complexes can react with air to remove carbon dioxide and convert it to a metal carbonate, similar to what is found in many naturally occurring minerals.

Transition metals are located near the center of the periodic table and their name arises from the transition of electrons from low energy to high energy states and back again, giving rise to distinctive colors. For this study, the scientists landed on vanadium, named for Vanadis, the old Norse name for the Scandinavian goddess of love said to be so beautiful her tears turned to gold.

Nyman explains that carbon dioxide exists in the atmosphere at a density of 400 parts per million. That means for every 1 million air molecules, 400 of them are carbon dioxide, or 0.04%.

“A challenge with direct air capture is finding molecules or materials that are selective enough, or other reactions with more abundant air molecules, such as reactions with water, will outcompete the reaction with CO2,” Nyman said. “Our team synthesized a series of molecules that contain three parts that are important in removing carbon dioxide from the atmosphere, and they work together.”

One part was vanadium, so named because of the range of beautiful colors it can exhibit, and another part was peroxide, which bonded to the vanadium. Because a vanadium peroxide molecule is negatively charged, it needed alkali cations for charge balance, Nyman said, and the researchers used potassium, rubidium and cesium alkali cations for this study.

[…]

vanadium peroxide is a beautiful, purple Goldilocks that becomes golden when exposed to air and binds a carbon dioxide molecule.”

She notes that another valuable characteristic of vanadium is that it allows for the comparatively low release temperature of about 200 degrees Celsius for the captured carbon dioxide.

[…]

“Being able to rerelease the captured CO2 enables reuse of the carbon capture materials, and the lower the temperature required for doing that, the less energy that’s needed and the smaller the cost. There are some very clever ideas about reuse of captured carbon already being implemented — for example, piping the captured CO2 into a greenhouse to grow plants.”

[…]

Story Source:

Materials provided by Oregon State University. Original written by Steve Lundeberg. Note: Content may be edited for style and length.


Journal Reference:

  1. Eduard Garrido Ribó, Zhiwei Mao, Jacob S. Hirschi, Taylor Linsday, Karlie Bach, Eric D. Walter, Casey R. Simons, Tim J. Zuehlsdorff, May Nyman. Implementing vanadium peroxides as direct air carbon capture materials. Chemical Science, 2024; 15 (5): 1700 DOI: 10.1039/D3SC05381D

 

Source: Key advance for capturing carbon from the air | ScienceDaily

Fermi Resonance explains why carbon dioxide causes global warming

illustration of Fermi Resonance

Global warming is largely caused by carbon dioxide and other gases absorbing infrared radiation, trapping heat in Earth’s atmosphere – known as the greenhouse effect.

The most accurate climate models use precise measurements of the amount of radiation CO₂ can absorb to calculate how much heat will be trapped in the atmosphere. These models are excellent at predicting future changes in Earth’s climate, but they don’t provide a physical explanation for why this gas can absorb so much radiation, which can make their predictions difficult to explain.

Robin Wordsworth at Harvard University and his colleagues have now shown how CO₂’s heat-trapping properties can be explained in terms of quantum mechanical effects, in particular a phenomenon called the Fermi resonance.

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“Rather than just a narrow range of radiation getting absorbed, as you would naively expect, it becomes much broader,” says Wordsworth. “It’s this broadening which is really critical to understanding why carbon dioxide is an important greenhouse gas.”

The Fermi resonance describes how the different directions and patterns in which molecules vibrate can influence each other and make them vibrate more. This is similar to how two pendulums, connected by a shared string, can increase the amplitude of each other’s swinging.

A molecule of CO₂ consists of two oxygen atoms bonded to one carbon atom. Two of the molecule’s vibrations influence each other to make it absorb more light: a side-to-side stretching of the oxygen atoms, and a sidewinder snake-like zigzagging of these atoms.

Wordsworth and his colleagues came up with equations to describe how much radiation CO₂ can absorb based on its physical properties, with and without the Fermi resonance. They found that its light-absorbing features and its warming effect on Earth’s atmosphere could only be reproduced when the resonance was included.

The Fermi resonance was responsible for nearly half of the total warming effect. “Even things that are happening on the scale of our planet are determined, ultimately, by what’s going on at the micro scale,” says Wordsworth.

While it was already known that CO₂ had a particularly large Fermi resonance, having an equation that links this to the greenhouse effect could be useful for quick calculations without running a full climate model, says Jonathan Tennyson at University College London. This could also help physicists model the climate of exoplanets, which can require large amounts of computing power to fully simulate.

Something that Wordsworth and his team couldn’t explain is why CO₂ vibrates in such a unique way – a question that might never be answered without a theory of everything. “There doesn’t seem to be a clear reason why this resonance occurs in CO₂,” says Wordsworth. “One could imagine a different universe where it was slightly different, and carbon dioxide might not have the same effects.”

 

Source: Quantum quirk explains why carbon dioxide causes global warming | New Scientist

Artificial cartilage with the help of 3D printing

cartelige stem cells 3d printed in the letters TU

Growing cartilage tissue in the lab could help patiens with injuries, but it is very hard to make the tissue grow in exactly the right shape. A new approach could solve this problem: Tiny spherical containers are created with a high-resolution 3D printer. These containers are then filled with cells and assembled into the desired shape. The cells from different containers connect, the container itself is degradable and eventually disappears.

scaffolded spheroids for tissue engineering

[…]

A special high-resolution 3D printing process is used to create tiny, porous spheres made of biocompatible and degradable plastic, which are then colonized with cells. These spheroids can then be arranged in any geometry, and the cells of the different units combine seamlessly to form a uniform, living tissue. Cartilage tissue, with which the concept has now been demonstrated at TU Wien, was previously considered particularly challenging in this respect.

Tiny spherical cages as a scaffold for the cells

“Cultivating cartilage cells from stem cells is not the biggest challenge. The main problem is that you usually have little control over the shape of the resulting tissue,”

[…]

To prevent this, the research team at TU Wien is working with a new approach: specially developed laser-based high-resolution 3D printing systems are used to create tiny cage-like structures that look like mini footballs and have a diameter of just a third of a millimeter. They serve as a support structure and form compact building blocks that can then be assembled into any shape.

Stem cells are first introduced into these football-shaped mini-cages, which quickly fill the tiny volume completely.

[…]

The team used differentiated stem cells — i.e. stem cells that can no longer develop into any type of tissue, but are already predetermined to form a specific type of tissue, in this case cartilage tissue.

[…]

The tiny 3D-printed scaffolds give the overall structure mechanical stability while the tissue continues to mature. Over a period of a few months, the plastic structures degrade, they simply disappear, leaving behind the finished tissue in the desired shape.

First step towards medical application

In principle, the new approach is not limited to cartilage tissue, it could also be used to tailor different kinds of larger tissues such as bone tissue. However, there are still a few tasks to be solved along the way — after all, unlike in cartilage tissue, blood vessels would also have to be incorporated for these tissues above a certain size.

“An initial goal would be to produce small, tailor-made pieces of cartilage tissue that can be inserted into existing cartilage material after an injury,” says Oliver Kopinski-Grünwald. “In any case, we have now been able to show that our method for producing cartilage tissue using spherical micro-scaffolds works in principle and has decisive advantages over other technologies.”

Source: Artificial cartilage with the help of 3D printing | ScienceDaily

Here’s Why Infants Are Strangely Resistant to COVID

Researchers have profiled the entire immune system in young children to compare their response to SARS-CoV-2 with that of adults. The results, published in Cell, show that infants’ systems mount a strong innate response in their noses, where the airborne virus usually enters the body. And unlike adults, babies don’t exhibit widespread inflammatory signaling throughout their circulatory system, perhaps preventing severe COVID.

The research team, led by Stanford Medicine immunologist Bali Pulendran, took blood samples from 81 infants (54 of whom became infected with the virus between one month and three years of age) and dozens of adults. The researchers also took weekly nasal swabs from kids and adults with and without COVID. They then analyzed proteins and gene activity in these samples to track participants’ innate and adaptive immune responses to the virus. “This sort of longitudinal mapping of the immune response of infants, to any virus, had not been done before,” Pulendran says.

The team found stark differences between children and adults in both adaptive and innate immune responses. Infected infants’ noses were flooded with inflammatory signaling molecules and cells. But unlike in the adults, there were no signs of inflammation in their blood.

[…]

Even without a widespread innate response, young children had surprisingly long-lasting levels of SARS-specific antibodies in their blood, Pulendran says. Future research revealing how these innate and adaptive responses are linked could eventually help improve nasally delivered vaccines for children and, potentially, adults.

A crucial question remains: What makes SARS-CoV-2 different from other respiratory viruses, such as influenza and respiratory syncytial virus, which are more deadly for infants?

[…]

Source: Here’s Why Infants Are Strangely Resistant to COVID | Scientific American

COPD: Inhalable nanoparticles could help treat chronic lung disease

Delivering medication to the lungs with inhalable nanoparticles may help treat chronic obstructive pulmonary disease (COPD). In mice with signs of the condition, the treatment improved lung function and reduced inflammation.

COPD causes the lungs’ airways to become progressively narrower and more rigid, obstructing airflow and preventing the clearance of mucus. As a result, mucus accumulates in the lungs, attracting bacterial pathogens that further exacerbate the disease.

This thick mucus layer also traps medications, making it challenging to treat infections. So, Junliang Zhu at Soochow University in China and his colleagues developed inhalable nanoparticles capable of penetrating mucus to deliver medicine deep within the lungs.

The researchers constructed the hollow nanoparticles from porous silica, which they filled with an antibiotic called ceftazidime. A shell of negatively charged compounds surrounding the nanoparticles blocked off pores, preventing antibiotic leakage. This negative charge also helps the nanoparticles penetrate mucus. Then, the slight acidity of the mucus transforms the shells’ charge from negative to positive, opening up pores and releasing the medication.

The researchers used an inhalable spray containing the nanoparticles to treat a bacterial lung infection in six mice with signs of COPD. An equal number of animals received only the antibiotic.

On average, mice treated with the nanoparticles had about 98 per cent less pathogenic bacteria inside their lungs than those given just the antibiotic. They also had fewer inflammatory molecules in their lungs and lower carbon dioxide in their blood, indicating better lung function.

These findings suggest the nanoparticles could improve drug delivery in people with COPD or other lung conditions like cystic fibrosis where thick mucus makes it difficult to treat infections, says Vincent Rotello at the University of Massachusetts Amherst, who wasn’t involved in the study. However, it is unclear if these nanoparticles are cleared by lungs. “If you have a delivery system that builds up over time, that would be problematic,” he says.

Source: COPD: Inhalable nanoparticles could help treat chronic lung disease | New Scientist

Animals Can See Colors We Can’t. A New camera method gives us a good idea.

The rainbow looks different to a human than it does to a honeybee or a zebra finch. That’s because these animals can see colors that we humans simply can’t. Now scientists have developed a new video recording and analysis technique to better understand how the world looks through the eyes of other species. The accurate and relatively inexpensive method, described in a study published on January 23 in PLOS Biology, is already offering biologists surprising discoveries about the lives of different species.

Humans have three types of cone cells in their eyes. This trio of photoreceptors typically detects red, green and blue wavelengths of light, which combine into millions of distinct colors in the spectrum from 380 to 700 nanometers in wavelength—what we call “visible light.” Some animals, though, can see light with even higher frequencies, called ultraviolet, or UV, light. Most birds have this ability, along with honeybees, reptiles and certain bony fish.

[…]

To capture animal vision on video, Vasas and her colleagues developed a portable 3-D-printed enclosure containing a beam splitter that separates light into UV and the human-visible spectrum. The two streams are captured by two different cameras. One is a standard camera that detects visible-wavelength light, and the other is a modified camera that is sensitive to UV. On its own, the UV-sensitive camera wouldn’t be able to record detailed information on the rest of the light spectrum in a single shot. But paired together, the two cameras can simultaneously record high-quality video that encompasses a wide range of the light spectrum. Then a set of algorithms aligns the two videos and produces versions of the footage that are representative of different animals’ color views, such as those of birds or bees.

[…]

Capturing video in this way “fills a really important gap in our ability to model animal vision,” says Jolyon Troscianko, a visual ecologist at the University of Exeter in England, who wasn’t involved in the new research. He notes that in nature, “a lot of interesting things move,” such as animals that are engaging in mating dances or rapid defense displays. Until now, researchers studying these dynamic behaviors have been stuck with the human perspective.

[…]

The technique is already revealing unseen phenomena of the natural world, she adds: for example, by recording an iridescent peacock feather rotating under a light, the researchers found shifts in color that are even more vibrant to fellow peafowl than they are to humans. Vasas and her colleagues also captured the brief startle display of a black swallowtail caterpillar and saw for the first time that its hornlike defense appendages are UV-reflective.

A caterpillar’s antipredator display, as seen by a bee.
A caterpillar’s antipredator display, as seen by a bee. Credit: “Recording Animal-View Videos of the Natural World Using a Novel Camera System and Software Package,” by Vera Vasas et al., in PLOS Biology, Vol. 22, No. 1. Published online January 23, 2024 (CC BY 4.0)

“None of these things were hypotheses that we had in advance,” Vasas says. Moving forward, “I think it will reveal a lot of things that I can’t yet imagine.”

[…]

Source: Animals Can See Colors We Can’t–And New Tech Offers Us a Glimpse | Scientific American

Cells’ electric fields keep nanoparticles at bay, scientists confirm

The humble membranes that enclose our cells have a surprising superpower: They can push away nano-sized molecules that happen to approach them. A team including scientists at the National Institute of Standards and Technology (NIST) has figured out why, by using artificial membranes that mimic the behavior of natural ones. Their discovery could make a difference in how we design the many drug treatments that target our cells.

The team’s findings, which appear in the Journal of the American Chemical Society, confirm that the powerful electrical fields that cell membranes generate are largely responsible for repelling nanoscale particles from the surface of the cell.

This repulsion notably affects neutral, uncharged nanoparticles, in part because the smaller, charged the attracts crowd the membrane and push away the larger particles. Since many drug treatments are built around proteins and other nanoscale particles that target the membrane, the repulsion could play a role in the treatments’ effectiveness.

The findings provide the first direct evidence that the electric fields are responsible for the repulsion.

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Membranes form boundaries in nearly all kinds of cells. Not only does a cell have an that contains and protects the interior, but often there are other membranes inside, forming parts of organelles such as mitochondria and the Golgi apparatus. Understanding membranes is important to medical science, not least because proteins lodged in the are frequent drug targets. Some membrane proteins are like gates that regulate what gets into and out of the cell.

The region near these membranes can be a busy place. Thousands of types of different molecules crowd each other and the cell membrane—and as anyone who has tried to push through a crowd knows, it can be tough going. Smaller molecules such as salts move with relative ease because they can fit into tighter spots, but larger molecules, such as proteins, are limited in their movements.

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“How does crowding affect the cell and its behavior?” he said. “How, for example, do molecules in this soup get sorted inside the cell, making some of them available for biological functions, but not others? The effect of the membrane could make a difference.”

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scientists have paid scant attention to this effect at the nanoscale because it takes extremely powerful fields to move nanoparticles. But powerful fields are just what an electrically charged membrane generates.

“The electric field right near a membrane in a salty solution like our bodies produce can be astoundingly strong,” Hoogerheide said. “Its strength falls off rapidly with distance, creating large field gradients that we figured might repel nearby particles. So we used to look into it.”

Neutrons can distinguish between different isotopes of hydrogen, and the team designed experiments that explored a membrane’s effect on nearby molecules of PEG, a polymer that forms chargeless nano-sized particles. Hydrogen is a major constituent of PEG, and by immersing the membrane and PEG into a solution of heavy water—which is made with deuterium in place of ordinary water’s —the team could measure how closely the PEG particles approached the membrane. They used a technique known as neutron reflectometry at the NCNR as well as instruments at Oak Ridge National Laboratory.

Together with , the experiments revealed the first-ever evidence that the membranes’ powerful field gradients were the culprit behind the repulsion: The PEG molecules were more strongly repelled from charged surfaces than from neutral surfaces.

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More information: Marcel Aguilella-Arzo et al, Charged Biological Membranes Repel Large Neutral Molecules by Surface Dielectrophoresis and Counterion Pressure, Journal of the American Chemical Society (2024). DOI: 10.1021/jacs.3c12348. pubs.acs.org/doi/full/10.1021/jacs.3c12348

Source: Cells’ electric fields keep nanoparticles at bay, scientists confirm